| setops-methods {GenomicAlignments} | R Documentation |
Performs set operations on GAlignments objects.
## S4 method for signature 'GAlignments,GRanges' pintersect(x, y, ...) ## S4 method for signature 'GRanges,GAlignments' pintersect(x, y, ...)
x, y |
A GAlignments object and a GRanges object. They must have the same length. |
... |
Further arguments to be passed to or from other methods. |
A GAlignments object parallel to (i.e. same length as)
x and y.
The GAlignments class.
The setops-methods man page in the GenomicRanges package.
## Parallel intersection of a GAlignments and a GRanges object:
bamfile <- system.file("extdata", "ex1.bam", package="Rsamtools")
gal <- readGAlignments(bamfile)
pintersect(gal, shift(as(gal, "GRanges"), 6L))