| coef {DESeq2} | R Documentation |
Note: results tables with log2 fold change,
p-values, adjusted p-values, etc. for each gene are best
generated using the results function. The
coef function is designed for advanced users who
wish to inspect all model coefficients at once.
## S3 method for class 'DESeqDataSet' coef(object, SE = FALSE, ...)
object |
a DESeqDataSet returned by
|
SE |
whether to give the standard errors instead of coefficients. defaults to FALSE so that the coefficients are given. |
... |
ignored |
Estimated model coefficients or estimated standard errors
are provided in a matrix form, number of genes by number of
parameters, on the log2 scale. The columns correspond to
columns of the model matrix for final GLM fitting, i.e.,
attr(dds, "modelMatrix").
Michael Love
example("DESeq")
coef(dds)[1,]
coef(dds, SE=TRUE)[1,]